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  5. LOC_Os06g20500.1

LOC_Os06g20500.1


Description : Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana (sp|b6sfa4|maa3_arath : 821.0)


Gene families : OG0000652 (Archaeplastida) Phylogenetic Tree(s): OG0000652_tree ,
OG_05_0004500 (LandPlants) Phylogenetic Tree(s): OG_05_0004500_tree ,
OG_06_0004367 (SeedPlants) Phylogenetic Tree(s): OG_06_0004367_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g20500.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Mp5g19520.1 No alias helicase (SEN1) 0.02 Archaeplastida
Mp7g11100.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g124010.3.1 No alias helicase (SEN1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!