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  5. AMTR_s00007p00189640

AMTR_s00007p00189640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.159

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ32/33 splicing factor


Gene families : OG0002802 (Archaeplastida) Phylogenetic Tree(s): OG0002802_tree ,
OG_05_0002795 (LandPlants) Phylogenetic Tree(s): OG_05_0002795_tree ,
OG_06_0003143 (SeedPlants) Phylogenetic Tree(s): OG_06_0003143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00189640
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000802.14 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00021531.8 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
LOC_Os01g06290.1 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Solyc05g054920.4.1 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Zm00001e027602_P005 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Zm00001e027603_P003 No alias RSZ32/33 RNA splicing factor 0.04 Archaeplastida
Zm00001e029543_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 75
IPR001878 Znf_CCHC 104 119
IPR001878 Znf_CCHC 126 141
No external refs found!