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  5. LOC_Os06g23460.1

LOC_Os06g23460.1


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 483.0)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0005882 (SeedPlants) Phylogenetic Tree(s): OG_06_0005882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g23460.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
AT1G51580 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
AT5G15270 No alias RNA-binding KH domain-containing protein 0.06 Archaeplastida
AT5G46190 No alias RNA-binding KH domain-containing protein 0.02 Archaeplastida
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.02 Archaeplastida
GSVIVT01009261001 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Gb_37521 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Pp3c14_13560V3.1 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
Solyc01g106020.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Solyc03g034200.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Solyc04g077060.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Solyc05g007810.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Solyc08g048500.3.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e004486_P005 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e012623_P002 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e037033_P001 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Zm00001e039986_P003 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 424 491
IPR004088 KH_dom_type_1 586 649
IPR004088 KH_dom_type_1 188 257
No external refs found!