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  5. LOC_Os06g23950.1

LOC_Os06g23950.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g23950.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.11 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.04 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G04100 AGL57 AGAMOUS-like 57 0.04 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.03 Archaeplastida
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.11 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01037022001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Gb_05359 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_141872g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.06 Archaeplastida
MA_7858089g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.01 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.01 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Smo5960 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.02 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e019057_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030187_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!