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  5. LOC_Os06g29020.1

LOC_Os06g29020.1


Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)


Gene families : OG0002006 (Archaeplastida) Phylogenetic Tree(s): OG0002006_tree ,
OG_05_0001458 (LandPlants) Phylogenetic Tree(s): OG_05_0001458_tree ,
OG_06_0001429 (SeedPlants) Phylogenetic Tree(s): OG_06_0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g29020.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
MA_10431586g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g06860.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 Archaeplastida
Solyc10g007130.4.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Zm00001e009676_P002 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 13 75
IPR032001 SAWADEE_dom 126 253
No external refs found!