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  5. LOC_Os06g29690.1

LOC_Os06g29690.1


Description : no hits & (original description: none)


Gene families : OG0000441 (Archaeplastida) Phylogenetic Tree(s): OG0000441_tree ,
OG_05_0006257 (LandPlants) Phylogenetic Tree(s): OG_05_0006257_tree ,
OG_06_0008982 (SeedPlants) Phylogenetic Tree(s): OG_06_0008982_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g29690.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00194200 evm_27.TU.AmTr_v1... Dynein 8 kDa light chain, flagellar outer arm... 0.03 Archaeplastida
Cpa|evm.model.tig00000737.2 No alias Dynein 8 kDa light chain, flagellar outer arm... 0.01 Archaeplastida
MA_49964g0010 No alias Dynein 8 kDa light chain, flagellar outer arm... 0.03 Archaeplastida
Pp3c26_11770V3.1 No alias Dynein light chain type 1 family protein 0.03 Archaeplastida
Zm00001e014936_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e022826_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0007017 microtubule-based process IEA Interproscan
CC GO:0030286 dynein complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR001372 Dynein_light_chain_typ-1/2 63 122
No external refs found!