LOC_Os06g33600.1

Description : cyclic nucleotide-gated cation channel (CNGC)

Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0015137 (LandPlants) Phylogenetic Tree(s): OG_05_0015137_tree ,
OG_06_0014772 (SeedPlants) Phylogenetic Tree(s): OG_06_0014772_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g33600.1
Cluster	HCCA: Cluster_750

Target	Alias	Description	ECC score	Gene Family Method
AT2G46430	ATCNGC3, CNGC3, CNGC3.C	cyclic nucleotide gated channel 3	0.01	Archaeplastida
AT2G46440	CNGC11, ATCNGC11	cyclic nucleotide-gated channels	0.02	Archaeplastida
AT3G17700	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-binding transporter 1	0.01	Archaeplastida
AT4G01010	ATCNGC13, CNGC13	cyclic nucleotide-gated channel 13	0.01	Archaeplastida
AT5G54250	DND2, CNGC4,...	cyclic nucleotide-gated cation channel 4	0.05	Archaeplastida
AT5G57940	CNGC5, ATCNGC5	cyclic nucleotide gated channel 5	0.02	Archaeplastida
GSVIVT01027087001	No alias	Solute transport.channels.VIC superfamily.cyclic...	0.02	Archaeplastida
LOC_Os02g54760.1	No alias	cyclic nucleotide-gated cation channel (CNGC)	0.02	Archaeplastida
Zm00001e006772_P003	No alias	cyclic nucleotide-gated cation channel (CNGC)	0.01	Archaeplastida
Zm00001e034885_P002	No alias	cyclic nucleotide-gated cation channel (CNGC)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	55	237

External Links

No external refs found!