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  5. LOC_Os06g35970.1

LOC_Os06g35970.1


Description : Protodermal factor 1 OS=Arabidopsis thaliana (sp|q9s728|pdf1_arath : 80.9)


Gene families : OG0001668 (Archaeplastida) Phylogenetic Tree(s): OG0001668_tree ,
OG_05_0001072 (LandPlants) Phylogenetic Tree(s): OG_05_0001072_tree ,
OG_06_0004253 (SeedPlants) Phylogenetic Tree(s): OG_06_0004253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g35970.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00158450 evm_27.TU.AmTr_v1... Protodermal factor 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00858p00001360 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT2G42840 PDF1 protodermal factor 1 0.03 Archaeplastida
Gb_40194 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g10490.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g52690.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_111671g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g10620.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_23110V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c7_3869V3.1 No alias No annotation 0.03 Archaeplastida
Smo437656 No alias No description available 0.02 Archaeplastida
Solyc07g055950.3.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g011010.2.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e014410_P001 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e016528_P003 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e019923_P004 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Zm00001e030674_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030749_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004560 alpha-L-fucosidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
MF GO:0015928 fucosidase activity IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!