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  5. LOC_Os06g37420.1

LOC_Os06g37420.1


Description : class-III histone deacetylase


Gene families : OG0002207 (Archaeplastida) Phylogenetic Tree(s): OG0002207_tree ,
OG_05_0005340 (LandPlants) Phylogenetic Tree(s): OG_05_0005340_tree ,
OG_06_0006557 (SeedPlants) Phylogenetic Tree(s): OG_06_0006557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g37420.1
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00052p00062950 evm_27.TU.AmTr_v1... Histone deacetylase 2 OS=Arabidopsis thaliana 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 57 336
No external refs found!