AMTR_s00007p00238950 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.249

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.RAV-type transcription factor

Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000701 (SeedPlants) Phylogenetic Tree(s): OG_06_0000701_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00238950
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00040300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
AT1G51120	No alias	AP2/B3 transcription factor family protein	0.02	Archaeplastida
AT1G68840	EDF2, AtRAV2,...	related to ABI3/VP1 2	0.04	Archaeplastida
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.06	Archaeplastida
GSVIVT01011947001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01019699001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01033902001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
Gb_18035	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
Gb_33917	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
LOC_Os01g04800.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
LOC_Os01g49830.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
LOC_Os04g49230.1	No alias	transcription factor (RAV/NGATHA)	0.02	Archaeplastida
LOC_Os05g47650.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
LOC_Os06g01860.1	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida
LOC_Os08g06120.1	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
MA_10432625g0010	No alias	transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_106270g0010	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
MA_116574g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
MA_23673g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_70029g0010	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Mp2g22250.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
Pp3c1_16700V3.1	No alias	related to ABI3/VP1 1	0.03	Archaeplastida
Pp3c2_23660V3.1	No alias	AP2/B3 transcription factor family protein	0.03	Archaeplastida
Solyc04g007000.2.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
Solyc05g009790.1.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	Archaeplastida
Solyc12g098460.2.1	No alias	AP2/ERF and B3 domain-containing transcription factor...	0.05	Archaeplastida
Zm00001e000156_P001	No alias	transcription factor (RAV/NGATHA)	0.02	Archaeplastida
Zm00001e016956_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Zm00001e020092_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
Zm00001e026443_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.07	Archaeplastida
Zm00001e028111_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	Archaeplastida
Zm00001e032325_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Zm00001e039393_P002	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e040214_P001	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	Neighborhood
MF	GO:0005230	extracellular ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0005231	excitatory extracellular ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0005234	extracellularly glutamate-gated ion channel activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
MF	GO:0008066	glutamate receptor activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0015276	ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0022824	transmitter-gated ion channel activity	IEP	Neighborhood
MF	GO:0022834	ligand-gated channel activity	IEP	Neighborhood
MF	GO:0022835	transmitter-gated channel activity	IEP	Neighborhood
CC	GO:0030288	outer membrane-bounded periplasmic space	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030594	neurotransmitter receptor activity	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
CC	GO:0042597	periplasmic space	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	200	308
IPR001471	AP2/ERF_dom	66	114

External Links

No external refs found!

AMTR_s00007p00238950 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation