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  5. LOC_Os06g43590.2

LOC_Os06g43590.2


Description : VPS46/CHMP1 associated protein of ESCRT-III complex


Gene families : OG0002047 (Archaeplastida) Phylogenetic Tree(s): OG0002047_tree ,
OG_05_0002010 (LandPlants) Phylogenetic Tree(s): OG_05_0002010_tree ,
OG_06_0002531 (SeedPlants) Phylogenetic Tree(s): OG_06_0002531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g43590.2
Cluster HCCA: Cluster_315

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00206680 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 Archaeplastida
AT1G73030 CHMP1A, VPS46.2 SNF7 family protein 0.07 Archaeplastida
Mp3g15320.1 No alias VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 Archaeplastida
Solyc03g121360.1.1 No alias VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:0072546 ER membrane protein complex IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
InterPro domains Description Start Stop
IPR005024 Snf7_fam 13 175
No external refs found!