LOC_Os06g43610.1


Description : formamidopyrimidine-DNA glycosylase (FPG1)


Gene families : OG0003806 (Archaeplastida) Phylogenetic Tree(s): OG0003806_tree ,
OG_05_0004351 (LandPlants) Phylogenetic Tree(s): OG_05_0004351_tree ,
OG_06_0004745 (SeedPlants) Phylogenetic Tree(s): OG_06_0004745_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g43610.1
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
Mp2g07760.1 No alias formamidopyrimidine-DNA glycosylase (FPG1) 0.02 Archaeplastida
Solyc03g117510.4.1 No alias formamidopyrimidine-DNA glycosylase (FPG1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA Interproscan
BP GO:0006284 base-excision repair IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR012319 FPG_cat 1 133
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 148 234
No external refs found!