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  5. LOC_Os06g44860.1

LOC_Os06g44860.1


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g44860.1
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00198330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.04 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.05 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.02 Archaeplastida
AT1G53160 SPL4 squamosa promoter binding protein-like 4 0.04 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
AT2G33810 SPL3 squamosa promoter binding protein-like 3 0.03 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 Archaeplastida
Cre02.g104700 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre16.g692500 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_15381g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_22749g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.02 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Smo79699 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.07 Archaeplastida
Zm00001e013198_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e013761_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.09 Archaeplastida
Zm00001e021962_P003 No alias transcription factor (SBP) 0.1 Archaeplastida
Zm00001e021967_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e025110_P001 No alias transcription factor (SBP) 0.1 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e030416_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 181 254
No external refs found!