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  5. LOC_Os06g47890.2

LOC_Os06g47890.2


Description : component ADO of SCF E3 ubiquitin ligase complex. photoreceptor (ADO)


Gene families : OG0001227 (Archaeplastida) Phylogenetic Tree(s): OG0001227_tree ,
OG_05_0002873 (LandPlants) Phylogenetic Tree(s): OG_05_0002873_tree ,
OG_06_0002844 (SeedPlants) Phylogenetic Tree(s): OG_06_0002844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g47890.2
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00230710 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
Cpa|evm.model.tig00001030.16 No alias No description available 0.02 Archaeplastida
GSVIVT01029229001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01035529001 No alias External stimuli response.light.UV-A/blue... 0.07 Archaeplastida
MA_70291g0010 No alias component ADO of SCF E3 ubiquitin ligase complex.... 0.02 Archaeplastida
Mp3g14360.1 No alias component ADO of SCF E3 ubiquitin ligase complex.... 0.03 Archaeplastida
Solyc01g005300.4.1 No alias component ADO of SCF E3 ubiquitin ligase complex.... 0.02 Archaeplastida
Zm00001e013113_P003 No alias component ADO of SCF E3 ubiquitin ligase complex.... 0.03 Archaeplastida
Zm00001e013673_P001 No alias No annotation 0.08 Archaeplastida
Zm00001e030267_P002 No alias component ADO of SCF E3 ubiquitin ligase complex.... 0.05 Archaeplastida
Zm00001e040068_P001 No alias component FBX of SCF E3 ubiquitin ligase complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011498 Kelch_2 538 585
IPR000014 PAS 60 166
IPR001810 F-box_dom 224 264
No external refs found!