1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g48750.2

LOC_Os06g48750.2


Description : mRNA unwinding factor (eIF4A)


Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree ,
OG_05_0001711 (LandPlants) Phylogenetic Tree(s): OG_05_0001711_tree ,
OG_06_0001736 (SeedPlants) Phylogenetic Tree(s): OG_06_0001736_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g48750.2
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AT1G54270 EIF4A-2 eif4a-2 0.04 Archaeplastida
Cre06.g298650 No alias Protein biosynthesis.translation initiation.mRNA... 0.03 Archaeplastida
GSVIVT01036113001 No alias Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
MA_10432535g0010 No alias Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.02 Archaeplastida
Pp3c11_22980V3.1 No alias eukaryotic translation initiation factor 4A1 0.02 Archaeplastida
Pp3c6_1080V3.1 No alias eukaryotic translation initiation factor 4A1 0.03 Archaeplastida
Solyc12g096000.2.1 No alias mRNA unwinding factor (eIF4A) 0.03 Archaeplastida
Zm00001e013175_P002 No alias mRNA unwinding factor (eIF4A) 0.11 Archaeplastida
Zm00001e016284_P001 No alias helicase component eIF4A3 of RNA quality control Exon... 0.04 Archaeplastida
Zm00001e030233_P004 No alias mRNA unwinding factor (eIF4A) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 66 227
IPR001650 Helicase_C 267 375
No external refs found!