Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0005597 (LandPlants) Phylogenetic Tree(s): OG_05_0005597_tree ,
OG_06_0002193 (SeedPlants) Phylogenetic Tree(s): OG_06_0002193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: LOC_Os06g48950.1

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_31132 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.05 Archaeplastida
MA_10022392g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.08 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR010525 Auxin_resp 247 330
IPR033389 AUX/IAA_dom 992 1079
IPR003340 B3_DNA-bd 121 222
No external refs found!