1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g50900.1

LOC_Os06g50900.1


Description : transcription factor (bHLH)


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0003886 (LandPlants) Phylogenetic Tree(s): OG_05_0003886_tree ,
OG_06_0002813 (SeedPlants) Phylogenetic Tree(s): OG_06_0002813_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g50900.1
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00170610 evm_27.TU.AmTr_v1... External stimuli response.temperature.ICE-CBF cold... 0.03 Archaeplastida
AMTR_s00084p00111140 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Gb_15579 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_12807g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
Mp2g07150.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e013304_P003 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
Zm00001e030156_P003 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 158 180
No external refs found!