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  5. LOC_Os07g08660.1

LOC_Os07g08660.1


Description : component RPS15 of SSU proteome


Gene families : OG0002089 (Archaeplastida) Phylogenetic Tree(s): OG0002089_tree ,
OG_05_0002523 (LandPlants) Phylogenetic Tree(s): OG_05_0002523_tree ,
OG_06_0002663 (SeedPlants) Phylogenetic Tree(s): OG_06_0002663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g08660.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00076070 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
AT1G04270 RPS15 cytosolic ribosomal protein S15 0.44 Archaeplastida
AT5G09510 No alias Ribosomal protein S19 family protein 0.29 Archaeplastida
Cpa|evm.model.tig00020830.61 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
Cre08.g360900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.36 Archaeplastida
GSVIVT01000754001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
GSVIVT01010903001 No alias 40S ribosomal protein S15 OS=Picea mariana 0.03 Archaeplastida
GSVIVT01018113001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 Archaeplastida
Gb_16516 No alias component RPS15 of SSU proteome 0.15 Archaeplastida
Gb_36524 No alias component RPS15 of SSU proteome 0.15 Archaeplastida
MA_14543g0010 No alias component RPS15 of SSU proteome 0.19 Archaeplastida
MA_18691g0010 No alias 40S ribosomal protein S15 OS=Picea mariana... 0.2 Archaeplastida
Mp3g15000.1 No alias component RPS15 of SSU proteome 0.4 Archaeplastida
Pp3c12_9180V3.1 No alias Ribosomal protein S19 family protein 0.4 Archaeplastida
Pp3c13_19770V3.1 No alias Ribosomal protein S19 family protein 0.02 Archaeplastida
Pp3c3_23700V3.1 No alias Ribosomal protein S19 family protein 0.23 Archaeplastida
Pp3c4_15250V3.1 No alias Ribosomal protein S19 family protein 0.27 Archaeplastida
Smo172403 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Solyc02g082000.3.1 No alias component RPS15 of SSU proteome 0.45 Archaeplastida
Solyc09g083370.3.1 No alias component RPS15 of SSU proteome 0.34 Archaeplastida
Zm00001e011449_P001 No alias component RPS15 of SSU proteome 0.42 Archaeplastida
Zm00001e011450_P001 No alias component RPS15 of SSU proteome 0.24 Archaeplastida
Zm00001e032961_P001 No alias component RPS15 of SSU proteome 0.21 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 52 137
No external refs found!