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  5. LOC_Os07g09370.1

LOC_Os07g09370.1


Description : RNA editing factor (CRR28)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012931 (LandPlants) Phylogenetic Tree(s): OG_05_0012931_tree ,
OG_06_0012969 (SeedPlants) Phylogenetic Tree(s): OG_06_0012969_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g09370.1
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.04 Archaeplastida
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.05 Archaeplastida
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
AMTR_s00039p00210570 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00057p00087430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00065p00033910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49740... 0.02 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
AMTR_s00173p00057570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.06 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.06 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.07 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_33537 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_37510 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_8893194g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.02 Archaeplastida
Smo98955 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.05 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.04 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.09 Archaeplastida
Solyc03g120460.4.1 No alias No annotation 0.02 Archaeplastida
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.05 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.08 Archaeplastida
Solyc09g015370.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.07 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.04 Archaeplastida
Solyc12g096510.3.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.07 Archaeplastida
Zm00001e007600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Zm00001e012691_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.08 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.06 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e034445_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 213 238
IPR002885 Pentatricopeptide_repeat 242 267
IPR002885 Pentatricopeptide_repeat 314 338
IPR002885 Pentatricopeptide_repeat 101 128
IPR002885 Pentatricopeptide_repeat 277 304
IPR002885 Pentatricopeptide_repeat 130 177
IPR032867 DYW_dom 415 540
No external refs found!