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  5. AMTR_s00008p00026380

AMTR_s00008p00026380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.8

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0001287 (LandPlants) Phylogenetic Tree(s): OG_05_0001287_tree ,
OG_06_0001319 (SeedPlants) Phylogenetic Tree(s): OG_06_0001319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00026380
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.97 No alias Vesicle trafficking.regulation of membrane tethering and... 0.01 Archaeplastida
GSVIVT01033357001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.01 Archaeplastida
Gb_12177 No alias A-class RAB GTPase 0.02 Archaeplastida
LOC_Os05g01480.1 No alias A-class RAB GTPase 0.02 Archaeplastida
MA_10428137g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_59492g0010 No alias A-class RAB GTPase 0.05 Archaeplastida
Pp3c14_15310V3.1 No alias RAB GTPase homolog A2B 0.02 Archaeplastida
Solyc04g012180.4.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e033825_P001 No alias A-class RAB GTPase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0007264 small GTPase mediated signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
MF GO:0051766 inositol trisphosphate kinase activity IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!