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  5. LOC_Os07g12250.1

LOC_Os07g12250.1


Description : pri-miRNA recruitment factor (STV1). component RPL24 of LSU proteome component


Gene families : OG0001838 (Archaeplastida) Phylogenetic Tree(s): OG0001838_tree ,
OG_05_0001764 (LandPlants) Phylogenetic Tree(s): OG_05_0001764_tree ,
OG_06_0003228 (SeedPlants) Phylogenetic Tree(s): OG_06_0003228_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g12250.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00095150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
AMTR_s00119p00055300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
AT2G36620 RPL24A ribosomal protein L24 0.22 Archaeplastida
AT3G53020 STV1, RPL24, RPL24B Ribosomal protein L24e family protein 0.25 Archaeplastida
Cpa|evm.model.tig00001093.9 No alias No description available 0.17 Archaeplastida
Cre09.g391097 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01010601001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 Archaeplastida
GSVIVT01033743001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
GSVIVT01034676001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Gb_07396 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.05 Archaeplastida
MA_137618g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_14639g0010 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.03 Archaeplastida
MA_6199g0020 No alias No annotation 0.06 Archaeplastida
Mp2g20400.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.02 Archaeplastida
Mp5g17510.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.23 Archaeplastida
Pp3c13_10770V3.1 No alias ribosomal protein L24 0.17 Archaeplastida
Pp3c1_16170V3.1 No alias ribosomal protein L24 0.16 Archaeplastida
Pp3c3_10840V3.1 No alias ribosomal protein L24 0.08 Archaeplastida
Pp3c3_8930V3.1 No alias Ribosomal protein L24e family protein 0.07 Archaeplastida
Pp3c4_25160V3.1 No alias ribosomal protein L24 0.08 Archaeplastida
Pp3c4_25170V3.1 No alias ribosomal protein L24 0.15 Archaeplastida
Smo438784 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Solyc09g008800.3.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.21 Archaeplastida
Solyc10g083740.3.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.17 Archaeplastida
Solyc10g085480.2.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.11 Archaeplastida
Zm00001e004947_P001 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.33 Archaeplastida
Zm00001e012463_P004 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.28 Archaeplastida
Zm00001e027315_P001 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.21 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000988 Ribosomal_L24e-rel 4 67
No external refs found!