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  5. LOC_Os07g12490.1

LOC_Os07g12490.1


Description : KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica (sp|q75gr5|spin1_orysj : 424.0)


Gene families : OG0001008 (Archaeplastida) Phylogenetic Tree(s): OG0001008_tree ,
OG_05_0000848 (LandPlants) Phylogenetic Tree(s): OG_05_0000848_tree ,
OG_06_0001767 (SeedPlants) Phylogenetic Tree(s): OG_06_0001767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g12490.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Zm00001e028863_P001 No alias KH domain-containing protein SPIN1 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 141 186
IPR032377 STAR_dimer 25 73
No external refs found!