LOC_Os07g13260.1

Description : transcription factor (DOF)

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g13260.1
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00030p00153440	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00069p00049300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00119p00099150	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
AMTR_s00160p00046100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G28310	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G69570	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT2G28510	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT2G28810	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT2G37590	DOF2.4, ATDOF2.4	DNA binding with one finger 2.4	0.04	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT5G02460	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01005057001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01007992001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.02	Archaeplastida
Gb_20867	No alias	Cyclic dof factor 3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Gb_23561	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os01g48290.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
LOC_Os04g58190.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
MA_459791g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_46520g0010	No alias	transcription factor (DOF)	0.05	Archaeplastida
MA_7537g0010	No alias	transcription factor (DOF)	0.04	Archaeplastida
Mp2g20790.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_2000V3.1	No alias	cycling DOF factor 3	0.04	Archaeplastida
Pp3c15_3180V3.1	No alias	cycling DOF factor 3	0.03	Archaeplastida
Pp3c17_23300V3.1	No alias	cycling DOF factor 3	0.05	Archaeplastida
Pp3c17_7930V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Pp3c6_13360V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.04	Archaeplastida
Smo29617	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Smo89924	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Solyc02g076850.2.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc02g078620.1.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc04g079570.1.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc05g054510.2.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc06g076030.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc09g010680.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e001988_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e003414_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005107_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e012437_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e012824_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e028672_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e032133_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e041444_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e041944_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	53	107

External Links

No external refs found!

LOC_Os07g13260.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation