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  5. LOC_Os07g15640.1

LOC_Os07g15640.1


Description : Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana (sp|o22137|pp202_arath : 301.0)


Gene families : OG0014170 (Archaeplastida) Phylogenetic Tree(s): OG0014170_tree ,
OG_05_0014121 (LandPlants) Phylogenetic Tree(s): OG_05_0014121_tree ,
OG_06_0014030 (SeedPlants) Phylogenetic Tree(s): OG_06_0014030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g15640.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010016001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Solyc04g064650.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 336
IPR002885 Pentatricopeptide_repeat 409 439
IPR002885 Pentatricopeptide_repeat 214 242
IPR002885 Pentatricopeptide_repeat 276 305
IPR002885 Pentatricopeptide_repeat 450 472
IPR002885 Pentatricopeptide_repeat 245 274
IPR002885 Pentatricopeptide_repeat 381 406
IPR002885 Pentatricopeptide_repeat 183 213
No external refs found!