LOC_Os07g20420.1

Description : Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana (sp|q9lw32|pp258_arath : 621.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g20420.1
Cluster	HCCA: Cluster_167

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00084p00089150	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	Archaeplastida
AT1G56570	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT2G02750	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT2G03880	REME1	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G01580	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G02330	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G03580	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT3G11460	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT3G21470	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.04	Archaeplastida
AT3G23330	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.07	Archaeplastida
AT3G49142	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
AT4G14850	LOI1, MEF11	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Archaeplastida
AT4G18840	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.03	Archaeplastida
AT5G39680	EMB2744	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT5G65570	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
Cpa\|evm.model.tig00001038.5	No alias	No description available	0.01	Archaeplastida
GSVIVT01000244001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01000420001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01000968001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
GSVIVT01010654001	No alias	Pentatricopeptide repeat-containing protein At4g38010...	0.03	Archaeplastida
GSVIVT01015233001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
GSVIVT01018877001	No alias	Pentatricopeptide repeat-containing protein At5g44230...	0.04	Archaeplastida
GSVIVT01021774001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.03	Archaeplastida
GSVIVT01024493001	No alias	Pentatricopeptide repeat-containing protein At4g39952,...	0.05	Archaeplastida
GSVIVT01024588001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01024870001	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
GSVIVT01026141001	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.04	Archaeplastida
GSVIVT01026881001	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
GSVIVT01029347001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01029885001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01030054001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.05	Archaeplastida
GSVIVT01030443001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
GSVIVT01033004001	No alias	Pentatricopeptide repeat-containing protein At3g26782,...	0.03	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
GSVIVT01036393001	No alias	Pentatricopeptide repeat-containing protein At1g71490...	0.02	Archaeplastida
GSVIVT01036975001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
GSVIVT01038381001	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_33070	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_33328	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_33537	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_33726	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os07g39090.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os10g40920.1	No alias	RNA editing factor (MEF13)	0.04	Archaeplastida
LOC_Os12g01850.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_131g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_14381g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_210823g0010	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.02	Archaeplastida
MA_30949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_615077g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_71104g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_83898g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_8893194g0010	No alias	RNA editing factor (MEF1)	0.03	Archaeplastida
MA_9258g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo102603	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
Smo424099	No alias	Pentatricopeptide repeat-containing protein At4g31850,...	0.02	Archaeplastida
Smo79648	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Smo82024	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Smo85415	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.02	Archaeplastida
Smo92471	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc02g065410.3.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
Solyc02g082160.2.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
Solyc03g098420.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Solyc04g009210.1.1	No alias	Pentatricopeptide repeat-containing protein At5g08305...	0.04	Archaeplastida
Solyc04g051480.1.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc05g023900.1.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Solyc06g066080.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
Solyc07g053520.2.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc08g023640.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
Solyc09g009950.4.1	No alias	RNA editing factor (MEF10)	0.03	Archaeplastida
Solyc09g090220.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc09g092050.4.1	No alias	Pentatricopeptide repeat-containing protein At1g04840...	0.04	Archaeplastida
Solyc10g054730.1.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Zm00001e001007_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e001918_P001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
Zm00001e002234_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e003284_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Zm00001e003562_P001	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Zm00001e005246_P001	No alias	Pentatricopeptide repeat-containing protein At2g41080...	0.03	Archaeplastida
Zm00001e006389_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
Zm00001e007538_P001	No alias	RNA editing factor (MEF21)	0.05	Archaeplastida
Zm00001e007600_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Zm00001e008203_P002	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
Zm00001e009339_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e009484_P001	No alias	Pentatricopeptide repeat-containing protein At1g71490...	0.05	Archaeplastida
Zm00001e011519_P001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
Zm00001e011923_P001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.02	Archaeplastida
Zm00001e012607_P002	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Zm00001e013211_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida
Zm00001e013713_P001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
Zm00001e014800_P001	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.04	Archaeplastida
Zm00001e015358_P001	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.03	Archaeplastida
Zm00001e018565_P001	No alias	Pentatricopeptide repeat-containing protein At3g13880...	0.03	Archaeplastida
Zm00001e020567_P001	No alias	RNA editing factor (MEF7)	0.05	Archaeplastida
Zm00001e020583_P001	No alias	Pentatricopeptide repeat-containing protein At2g33680...	0.05	Archaeplastida
Zm00001e022858_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.06	Archaeplastida
Zm00001e023504_P001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Zm00001e025557_P001	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.04	Archaeplastida
Zm00001e027978_P001	No alias	RNA editing factor (MEF1)	0.04	Archaeplastida
Zm00001e030887_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Zm00001e031396_P001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.07	Archaeplastida
Zm00001e032242_P001	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.02	Archaeplastida
Zm00001e033310_P001	No alias	Pentatricopeptide repeat-containing protein At1g71490...	0.04	Archaeplastida
Zm00001e034478_P001	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
Zm00001e035419_P001	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.05	Archaeplastida
Zm00001e035616_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e036302_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e036537_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e041246_P001	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	161	188
IPR002885	Pentatricopeptide_repeat	440	466
IPR032867	DYW_dom	540	663
IPR002885	Pentatricopeptide_repeat	263	312
IPR002885	Pentatricopeptide_repeat	365	412

External Links

No external refs found!

LOC_Os07g20420.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation