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  5. LOC_Os07g28900.1

LOC_Os07g28900.1


Description : Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana (sp|q9c9u0|pp118_arath : 655.0)


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0003722 (LandPlants) Phylogenetic Tree(s): OG_05_0003722_tree ,
OG_06_0003603 (SeedPlants) Phylogenetic Tree(s): OG_06_0003603_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g28900.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_29869 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.05 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
Solyc09g083110.3.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 299 345
IPR002885 Pentatricopeptide_repeat 718 759
IPR002885 Pentatricopeptide_repeat 819 858
IPR002885 Pentatricopeptide_repeat 651 677
IPR002885 Pentatricopeptide_repeat 616 642
IPR002885 Pentatricopeptide_repeat 683 712
IPR002885 Pentatricopeptide_repeat 441 462
IPR002885 Pentatricopeptide_repeat 266 296
IPR033443 PPR_long 489 594
No external refs found!