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  5. LOC_Os07g30930.1

LOC_Os07g30930.1


Description : Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana (sp|q9lr67|ppr9_arath : 556.0)


Gene families : OG0010098 (Archaeplastida) Phylogenetic Tree(s): OG0010098_tree ,
OG_05_0010141 (LandPlants) Phylogenetic Tree(s): OG_05_0010141_tree ,
OG_06_0008954 (SeedPlants) Phylogenetic Tree(s): OG_06_0008954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g30930.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Solyc10g008510.3.1 No alias Pentatricopeptide repeat-containing protein At1g03560,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 429 461
IPR002885 Pentatricopeptide_repeat 216 247
IPR002885 Pentatricopeptide_repeat 580 603
IPR002885 Pentatricopeptide_repeat 332 361
IPR002885 Pentatricopeptide_repeat 255 302
IPR002885 Pentatricopeptide_repeat 472 517
IPR002885 Pentatricopeptide_repeat 364 412
No external refs found!