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  5. LOC_Os07g31310.1

LOC_Os07g31310.1


Description : Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana (sp|b3h672|pp317_arath : 397.0)


Gene families : OG0001060 (Archaeplastida) Phylogenetic Tree(s): OG0001060_tree ,
OG_05_0001470 (LandPlants) Phylogenetic Tree(s): OG_05_0001470_tree ,
OG_06_0012025 (SeedPlants) Phylogenetic Tree(s): OG_06_0012025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g31310.1
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.03 Archaeplastida
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 Archaeplastida
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0018142 protein-DNA covalent cross-linking IEP Neighborhood
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0036297 interstrand cross-link repair IEP Neighborhood
CC GO:0043240 Fanconi anaemia nuclear complex IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 612 632
IPR002885 Pentatricopeptide_repeat 524 551
No external refs found!