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  5. LOC_Os07g32900.1

LOC_Os07g32900.1


Description : Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana (sp|q0wvk7|ppr12_arath : 540.0)


Gene families : OG0010073 (Archaeplastida) Phylogenetic Tree(s): OG0010073_tree ,
OG_05_0010098 (LandPlants) Phylogenetic Tree(s): OG_05_0010098_tree ,
OG_06_0008392 (SeedPlants) Phylogenetic Tree(s): OG_06_0008392_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g32900.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Zm00001e010465_P003 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 386
IPR002885 Pentatricopeptide_repeat 251 279
IPR002885 Pentatricopeptide_repeat 455 486
IPR002885 Pentatricopeptide_repeat 563 611
IPR002885 Pentatricopeptide_repeat 633 680
IPR002885 Pentatricopeptide_repeat 494 542
IPR002885 Pentatricopeptide_repeat 283 331
IPR002885 Pentatricopeptide_repeat 390 437
No external refs found!