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  5. LOC_Os07g33340.1

LOC_Os07g33340.1


Description : DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa subsp. japonica (sp|q0d622|rh32_orysj : 1348.0)


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0006899 (LandPlants) Phylogenetic Tree(s): OG_05_0006899_tree ,
OG_06_0007714 (SeedPlants) Phylogenetic Tree(s): OG_06_0007714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g33340.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 Archaeplastida
AMTR_s00002p00261540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
AT5G54910 No alias DEA(D/H)-box RNA helicase family protein 0.06 Archaeplastida
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000441.11 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 Archaeplastida
Cpa|evm.model.tig00000441.12 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020684.38 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
Cre03.g156150 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.07 Archaeplastida
Cre03.g188550 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.09 Archaeplastida
Cre06.g282600 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01015034001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032750001 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01037636001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_12810 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.05 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 Archaeplastida
Mp5g04780.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.02 Archaeplastida
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.04 Archaeplastida
Mp7g12890.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.06 Archaeplastida
Mp8g10290.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.04 Archaeplastida
Pp3c1_22540V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Pp3c4_14810V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.05 Archaeplastida
Solyc02g078880.4.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.05 Archaeplastida
Solyc03g114370.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g064520.3.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e010480_P001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.08 Archaeplastida
Zm00001e011842_P001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e016823_P002 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.08 Archaeplastida
Zm00001e027024_P001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 105 275
IPR001650 Helicase_C 312 421
IPR025313 DUF4217 463 526
No external refs found!