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  5. LOC_Os07g37010.1

LOC_Os07g37010.1


Description : cyclin (CYCD)


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0010948 (LandPlants) Phylogenetic Tree(s): OG_05_0010948_tree ,
OG_06_0010916 (SeedPlants) Phylogenetic Tree(s): OG_06_0010916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g37010.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00148150 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AMTR_s00072p00074880 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
AMTR_s00088p00097010 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
AMTR_s00135p00066200 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.05 Archaeplastida
AMTR_s00190p00017930 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.05 Archaeplastida
AT3G50070 CYCD3;3 CYCLIN D3;3 0.03 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.07 Archaeplastida
AT4G37630 CYCD5;1 cyclin d5;1 0.02 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.06 Archaeplastida
GSVIVT01000125001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 Archaeplastida
GSVIVT01000226001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01009432001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.06 Archaeplastida
GSVIVT01037810001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os09g21450.1 No alias cyclin (CYCD) 0.04 Archaeplastida
MA_103834g0010 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.05 Archaeplastida
MA_94639g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Solyc02g064900.3.1 No alias cyclin (CYCD) 0.02 Archaeplastida
Solyc02g079370.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Solyc02g092980.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc05g006050.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Solyc07g054950.2.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.1 Archaeplastida
Zm00001e018000_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.1 Archaeplastida
Zm00001e034405_P005 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e035575_P002 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e038767_P002 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 55 157
IPR004367 Cyclin_C-dom 160 257
No external refs found!