LOC_Os07g38730.1

Description : component alpha-Tubulin of alpha-beta-Tubulin heterodimer

Gene families : OG0000426 (Archaeplastida) Phylogenetic Tree(s): OG0000426_tree ,
OG_05_0000313 (LandPlants) Phylogenetic Tree(s): OG_05_0000313_tree ,
OG_06_0000596 (SeedPlants) Phylogenetic Tree(s): OG_06_0000596_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g38730.1
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AT1G04820	TOR2, TUA4	tubulin alpha-4 chain	0.06	Archaeplastida
AT1G50010	TUA2	tubulin alpha-2 chain	0.08	Archaeplastida
AT1G64740	TUA1	alpha-1 tubulin	0.03	Archaeplastida
AT4G14960	TUA6	Tubulin/FtsZ family protein	0.09	Archaeplastida
AT5G19770	TUA3	tubulin alpha-3	0.07	Archaeplastida
AT5G19780	TUA5	tubulin alpha-5	0.05	Archaeplastida
Cre03.g190950	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	Archaeplastida
Cre04.g216850	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
GSVIVT01006470001	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
GSVIVT01009258001	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.06	Archaeplastida
GSVIVT01025462001	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
GSVIVT01033415001	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
Gb_00907	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Gb_02715	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Gb_07962	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
MA_184192g0010	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
MA_273360g0010	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.07	Archaeplastida
MA_5963g0010	No alias	Tubulin alpha-2 chain OS=Eleusine indica...	0.03	Archaeplastida
MA_93486g0010	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Mp2g23500.1	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Mp4g00550.1	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Pp3c14_17800V3.1	No alias	tubulin alpha-2 chain	0.02	Archaeplastida
Pp3c25_1010V3.1	No alias	tubulin alpha-5	0.03	Archaeplastida
Pp3c4_2000V3.1	No alias	tubulin alpha-2 chain	0.02	Archaeplastida
Smo100162	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo178975	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.06	Archaeplastida
Smo230143	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo233518	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo234301	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Zm00001e011939_P002	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Zm00001e035332_P001	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005096	GTPase activator activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0070569	uridylyltransferase activity	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	3	213
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	263	392

External Links

No external refs found!

LOC_Os07g38730.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation