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  5. LOC_Os07g39820.1

LOC_Os07g39820.1


Description : transcription factor (GRAS). SHR gravity signalling transcription factor


Gene families : OG0006923 (Archaeplastida) Phylogenetic Tree(s): OG0006923_tree ,
OG_05_0004840 (LandPlants) Phylogenetic Tree(s): OG_05_0004840_tree ,
OG_06_0004404 (SeedPlants) Phylogenetic Tree(s): OG_06_0004404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g39820.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00182770 evm_27.TU.AmTr_v1... External stimuli response.gravity.sensing and... 0.05 Archaeplastida
AT4G37650 SHR, SGR7 GRAS family transcription factor 0.05 Archaeplastida
GSVIVT01000107001 No alias External stimuli response.gravity.sensing and... 0.05 Archaeplastida
Gb_17251 No alias transcription factor (GRAS). SHR gravity signalling... 0.02 Archaeplastida
Pp3c7_24880V3.1 No alias GRAS family transcription factor 0.05 Archaeplastida
Solyc02g092370.1.1 No alias transcription factor (GRAS). SHR gravity signalling... 0.05 Archaeplastida
Solyc08g014030.1.1 No alias transcription factor (GRAS). SHR gravity signalling... 0.05 Archaeplastida
Zm00001e002085_P001 No alias transcription factor (GRAS). SHR gravity signalling... 0.15 Archaeplastida
Zm00001e035411_P001 No alias transcription factor (GRAS). SHR gravity signalling... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 193 601
No external refs found!