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  5. AMTR_s00008p00253890

AMTR_s00008p00253890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.195

Description : LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana


Gene families : OG0001821 (Archaeplastida) Phylogenetic Tree(s): OG0001821_tree ,
OG_05_0001339 (LandPlants) Phylogenetic Tree(s): OG_05_0001339_tree ,
OG_06_0003475 (SeedPlants) Phylogenetic Tree(s): OG_06_0003475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00253890
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT1G21880 LYM1 lysm domain GPI-anchored protein 1 precursor 0.05 Archaeplastida
GSVIVT01008279001 No alias LysM domain-containing GPI-anchored protein 1... 0.05 Archaeplastida
GSVIVT01008882001 No alias LysM domain-containing GPI-anchored protein 1... 0.04 Archaeplastida
GSVIVT01023936001 No alias External stimuli response.biotic... 0.02 Archaeplastida
Gb_21712 No alias chitin receptor protein kinase (CEBiP) 0.02 Archaeplastida
LOC_Os02g53000.1 No alias LysM domain-containing GPI-anchored protein LYP6... 0.02 Archaeplastida
LOC_Os03g04110.1 No alias chitin receptor protein kinase (CEBiP) 0.03 Archaeplastida
LOC_Os06g10660.1 No alias LysM domain-containing GPI-anchored protein LYP6... 0.03 Archaeplastida
LOC_Os09g27890.1 No alias LysM domain-containing GPI-anchored protein LYP4... 0.06 Archaeplastida
LOC_Os09g37600.1 No alias chitin receptor protein kinase (CEBiP) 0.03 Archaeplastida
Mp5g22430.1 No alias chitin receptor protein kinase (CEBiP) 0.04 Archaeplastida
Smo89593 No alias LysM domain-containing GPI-anchored protein 1... 0.06 Archaeplastida
Solyc01g112080.3.1 No alias chitin receptor protein kinase (CEBiP) 0.09 Archaeplastida
Solyc11g012870.2.1 No alias LysM domain-containing GPI-anchored protein 1... 0.05 Archaeplastida
Zm00001e000277_P001 No alias chitin receptor protein kinase (CEBiP) 0.02 Archaeplastida
Zm00001e015978_P002 No alias LysM domain-containing GPI-anchored protein LYP6... 0.04 Archaeplastida
Zm00001e030792_P002 No alias LysM domain-containing GPI-anchored protein LYP6... 0.02 Archaeplastida
Zm00001e034324_P002 No alias LysM domain-containing GPI-anchored protein LYP4... 0.02 Archaeplastida
Zm00001e034935_P001 No alias chitin receptor protein kinase (CEBiP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR018392 LysM_dom 180 222
IPR018392 LysM_dom 114 160
No external refs found!