LOC_Os07g41790.2


Description : component Sm-G of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0001659 (Archaeplastida) Phylogenetic Tree(s): OG0001659_tree ,
OG_05_0004881 (LandPlants) Phylogenetic Tree(s): OG_05_0004881_tree ,
OG_06_0006017 (SeedPlants) Phylogenetic Tree(s): OG_06_0006017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g41790.2
Cluster HCCA: Cluster_351

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00092540 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
AT2G23930 SNRNP-G probable small nuclear ribonucleoprotein G 0.08 Archaeplastida
AT3G11500 No alias Small nuclear ribonucleoprotein family protein 0.1 Archaeplastida
Cpa|evm.model.tig00020531.48 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 Archaeplastida
Cpa|evm.model.tig00020553.48 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
Cre03.g164101 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Cre13.g566050 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 Archaeplastida
GSVIVT01032062001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 Archaeplastida
Gb_32195 No alias component LSm7 of U6-associated LSm accessory... 0.03 Archaeplastida
Mp4g05710.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida
Pp3c21_9740V3.1 No alias Small nuclear ribonucleoprotein family protein 0.05 Archaeplastida
Pp3c5_21480V3.1 No alias probable small nuclear ribonucleoprotein G 0.03 Archaeplastida
Pp3c8_4480V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Smo227744 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 Archaeplastida
Solyc11g006820.2.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Zm00001e006823_P001 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 13 64
No external refs found!