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  5. LOC_Os07g42880.1

LOC_Os07g42880.1


Description : Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana (sp|q9sud8|pp340_arath : 369.0)


Gene families : OG0015677 (Archaeplastida) Phylogenetic Tree(s): OG0015677_tree ,
OG_05_0017618 (LandPlants) Phylogenetic Tree(s): OG_05_0017618_tree ,
OG_06_0020150 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g42880.1
Cluster HCCA: Cluster_96


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 539 567
IPR002885 Pentatricopeptide_repeat 438 459
IPR002885 Pentatricopeptide_repeat 78 103
IPR002885 Pentatricopeptide_repeat 183 232
IPR002885 Pentatricopeptide_repeat 465 513
IPR002885 Pentatricopeptide_repeat 253 301
IPR002885 Pentatricopeptide_repeat 361 409
IPR002885 Pentatricopeptide_repeat 113 162
IPR002885 Pentatricopeptide_repeat 323 354
No external refs found!