LOC_Os07g42950.1

Description : component RPS6 of SSU proteome

Gene families : OG0002153 (Archaeplastida) Phylogenetic Tree(s): OG0002153_tree ,
OG_05_0001864 (LandPlants) Phylogenetic Tree(s): OG_05_0001864_tree ,
OG_06_0002064 (SeedPlants) Phylogenetic Tree(s): OG_06_0002064_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g42950.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00238890	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AMTR_s00048p00058600	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AMTR_s00077p00035710	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
AT4G31700	RPS6A, RPS6	ribosomal protein S6	0.3	Archaeplastida
AT5G10360	EMB3010, RPS6B	Ribosomal protein S6e	0.38	Archaeplastida
Cpa\|evm.model.tig00000704.73	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.31	Archaeplastida
Cre09.g400650	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
GSVIVT01009072001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	Archaeplastida
GSVIVT01015776001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
MA_10426804g0010	No alias	component RPS6 of SSU proteome	0.17	Archaeplastida
MA_72828g0010	No alias	component RPS6 of SSU proteome	0.24	Archaeplastida
Mp4g01750.1	No alias	component RPS6 of SSU proteome	0.46	Archaeplastida
Pp3c11_21120V3.1	No alias	Ribosomal protein S6e	0.34	Archaeplastida
Pp3c15_25430V3.1	No alias	Ribosomal protein S6e	0.14	Archaeplastida
Pp3c15_25780V3.1	No alias	Ribosomal protein S6e	0.29	Archaeplastida
Pp3c7_5780V3.1	No alias	Ribosomal protein S6e	0.25	Archaeplastida
Smo172795	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	Archaeplastida
Solyc08g006040.3.1	No alias	component RPS6 of SSU proteome	0.17	Archaeplastida
Solyc08g074240.3.1	No alias	component RPS6 of SSU proteome	0.35	Archaeplastida
Solyc12g096300.2.1	No alias	component RPS6 of SSU proteome	0.31	Archaeplastida
Zm00001e010802_P001	No alias	component RPS6 of SSU proteome	0.3	Archaeplastida
Zm00001e035580_P002	No alias	component RPS6 of SSU proteome	0.38	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	128

External Links

No external refs found!

LOC_Os07g42950.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation