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  5. LOC_Os07g43810.1

LOC_Os07g43810.1


Description : 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris (sp|q08935|roc1_nicsy : 240.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000810 (LandPlants) Phylogenetic Tree(s): OG_05_0000810_tree ,
OG_06_0004328 (SeedPlants) Phylogenetic Tree(s): OG_06_0004328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g43810.1
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.03 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01022600001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.05 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Solyc01g109660.2.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 182 252
IPR000504 RRM_dom 82 152
No external refs found!