LOC_Os07g44800.1

Description : chromatin remodeling factor (Rad5)

Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0007064 (LandPlants) Phylogenetic Tree(s): OG_05_0007064_tree ,
OG_06_0007526 (SeedPlants) Phylogenetic Tree(s): OG_06_0007526_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g44800.1
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021014.10	No alias	DNA repair protein RAD5A OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_33076	No alias	chromatin remodeling factor (Ris1)	0.03	Archaeplastida
MA_10434222g0010	No alias	chromatin remodeling factor (Rad5)	0.02	Archaeplastida
Pp3c18_11770V3.1	No alias	SNF2 domain-containing protein / helicase...	0.02	Archaeplastida
Smo429547	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Zm00001e022169_P001	No alias	chromatin remodeling factor (Rad5)	0.02	Archaeplastida
Zm00001e035695_P004	No alias	chromatin remodeling factor (Rad5)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	195	531
IPR001650	Helicase_C	646	762
IPR014905	HIRAN	20	114

External Links

No external refs found!