LOC_Os07g45360.1


Description : rRNA biogenesis RNA helicase (ROK1)


Gene families : OG0005882 (Archaeplastida) Phylogenetic Tree(s): OG0005882_tree ,
OG_05_0006934 (LandPlants) Phylogenetic Tree(s): OG_05_0006934_tree ,
OG_06_0006389 (SeedPlants) Phylogenetic Tree(s): OG_06_0006389_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g45360.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AT3G09720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Cpa|evm.model.tig00001071.15 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.06 Archaeplastida
Cre05.g238900 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.04 Archaeplastida
GSVIVT01025641001 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.08 Archaeplastida
Gb_03067 No alias rRNA biogenesis RNA helicase (ROK1) 0.07 Archaeplastida
Mp7g07690.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.07 Archaeplastida
Pp3c10_21520V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
Smo410231 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.04 Archaeplastida
Solyc09g007440.3.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 375 480
IPR011545 DEAD/DEAH_box_helicase_dom 170 335
No external refs found!