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  5. LOC_Os07g47780.1

LOC_Os07g47780.1


Description : component RPL18 of LSU proteome component


Gene families : OG0001941 (Archaeplastida) Phylogenetic Tree(s): OG0001941_tree ,
OG_05_0001876 (LandPlants) Phylogenetic Tree(s): OG_05_0001876_tree ,
OG_06_0001935 (SeedPlants) Phylogenetic Tree(s): OG_06_0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g47780.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT3G05590 RPL18 ribosomal protein L18 0.31 Archaeplastida
Cpa|evm.model.tig00000142.18 No alias 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum 0.36 Archaeplastida
Cre12.g512600 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 Archaeplastida
GSVIVT01028036001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01031168001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 Archaeplastida
GSVIVT01035120001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
Gb_16720 No alias component RPL18 of LSU proteome component 0.02 Archaeplastida
Gb_21301 No alias component RPL18 of LSU proteome component 0.1 Archaeplastida
MA_3674g0020 No alias 60S ribosomal protein L18-3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_5630845g0010 No alias no hits & (original description: none) 0.28 Archaeplastida
Mp1g22500.1 No alias component RPL18 of LSU proteome component 0.42 Archaeplastida
Pp3c1_3480V3.1 No alias ribosomal protein L18 0.35 Archaeplastida
Pp3c1_5330V3.1 No alias ribosomal protein L18 0.32 Archaeplastida
Pp3c2_32510V3.1 No alias ribosomal protein L18 0.39 Archaeplastida
Pp3c2_34080V3.1 No alias ribosomal protein L18 0.28 Archaeplastida
Pp3c7_22030V3.1 No alias ribosomal protein L18 0.14 Archaeplastida
Smo267976 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
Solyc01g099900.4.1 No alias component RPL18 of LSU proteome component 0.41 Archaeplastida
Solyc09g075290.3.1 No alias component RPL18 of LSU proteome component 0.45 Archaeplastida
Zm00001e026750_P001 No alias component RPL18 of LSU proteome component 0.41 Archaeplastida
Zm00001e031155_P001 No alias component RPL18 of LSU proteome component 0.39 Archaeplastida
Zm00001e035836_P001 No alias component RPL18 of LSU proteome component 0.44 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 2 195
No external refs found!