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  5. LOC_Os08g01100.1

LOC_Os08g01100.1


Description : High mobility group B protein 7 OS=Arabidopsis thaliana (sp|q8ldf9|hmgb7_arath : 111.0)


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0006412 (SeedPlants) Phylogenetic Tree(s): OG_06_0006412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01100.1
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00070550 evm_27.TU.AmTr_v1... High mobility group B protein 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G20696 NFD03, HMGB3, NFD3 high mobility group B3 0.03 Archaeplastida
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.12 Archaeplastida
AT5G23405 No alias HMG-box (high mobility group) DNA-binding family protein 0.03 Archaeplastida
AT5G23420 HMGB6 high-mobility group box 6 0.08 Archaeplastida
Cpa|evm.model.tig00000663.58 No alias No description available 0.03 Archaeplastida
Cre06.g261450 No alias No description available 0.04 Archaeplastida
GSVIVT01026642001 No alias HMG1/2-like protein OS=Glycine max 0.05 Archaeplastida
GSVIVT01034361001 No alias High mobility group B protein 7 OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_05796 No alias High mobility group B protein 1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Gb_32435 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_34784 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.11 Archaeplastida
MA_10436440g0030 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_72555g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_86565g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp8g07450.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c17_7580V3.1 No alias high mobility group B3 0.07 Archaeplastida
Solyc02g082700.3.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.04 Archaeplastida
Solyc04g008820.3.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.12 Archaeplastida
Zm00001e015392_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e024274_P002 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 93 155
No external refs found!