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  5. LOC_Os08g01640.1

LOC_Os08g01640.1


Description : Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica (sp|q76c99|rf1_orysi : 952.0)


Gene families : OG0001482 (Archaeplastida) Phylogenetic Tree(s): OG0001482_tree ,
OG_05_0000870 (LandPlants) Phylogenetic Tree(s): OG_05_0000870_tree ,
OG_06_0000537 (SeedPlants) Phylogenetic Tree(s): OG_06_0000537_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01640.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g01650.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.08 Archaeplastida
Smo51561 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Smo90583 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.03 Archaeplastida
Zm00001e011263_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e011267_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Zm00001e026658_P003 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 92 121
IPR002885 Pentatricopeptide_repeat 625 647
IPR002885 Pentatricopeptide_repeat 477 510
IPR002885 Pentatricopeptide_repeat 514 545
IPR002885 Pentatricopeptide_repeat 268 299
IPR002885 Pentatricopeptide_repeat 443 474
IPR002885 Pentatricopeptide_repeat 127 174
IPR002885 Pentatricopeptide_repeat 660 703
IPR002885 Pentatricopeptide_repeat 306 354
IPR002885 Pentatricopeptide_repeat 200 248
IPR002885 Pentatricopeptide_repeat 551 598
IPR002885 Pentatricopeptide_repeat 376 424
No external refs found!