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  5. LOC_Os08g02340.1

LOC_Os08g02340.1


Description : component RPP1 of LSU proteome component


Gene families : OG0001913 (Archaeplastida) Phylogenetic Tree(s): OG0001913_tree ,
OG_05_0002230 (LandPlants) Phylogenetic Tree(s): OG_05_0002230_tree ,
OG_06_0002832 (SeedPlants) Phylogenetic Tree(s): OG_06_0002832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g02340.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00113490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00100p00050800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT1G01100 No alias 60S acidic ribosomal protein family 0.29 Archaeplastida
AT4G00810 No alias 60S acidic ribosomal protein family 0.24 Archaeplastida
AT5G47700 No alias 60S acidic ribosomal protein family 0.19 Archaeplastida
Cpa|evm.model.tig00000342.4 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 Archaeplastida
GSVIVT01013983001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01019679001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
GSVIVT01027436001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.14 Archaeplastida
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.29 Archaeplastida
Mp3g02890.1 No alias component RPP1 of LSU proteome component 0.09 Archaeplastida
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.03 Archaeplastida
Pp3c14_21510V3.1 No alias 60S acidic ribosomal protein family 0.03 Archaeplastida
Pp3c17_22190V3.1 No alias 60S acidic ribosomal protein family 0.34 Archaeplastida
Pp3c1_36220V3.1 No alias 60S acidic ribosomal protein family 0.35 Archaeplastida
Pp3c20_2800V3.1 No alias 60S acidic ribosomal protein family 0.25 Archaeplastida
Pp3c23_18100V3.1 No alias 60S acidic ribosomal protein family 0.34 Archaeplastida
Pp3c8_22380V3.1 No alias 60S acidic ribosomal protein family 0.31 Archaeplastida
Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Solyc01g006160.3.1 No alias component RPP1 of LSU proteome component 0.12 Archaeplastida
Solyc01g016470.3.1 No alias component RPP1 of LSU proteome component 0.28 Archaeplastida
Solyc01g104370.4.1 No alias component RPP1 of LSU proteome component 0.13 Archaeplastida
Zm00001e021844_P001 No alias component RPP1 of LSU proteome component 0.1 Archaeplastida
Zm00001e029197_P001 No alias component RPP1 of LSU proteome component 0.31 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007029 endoplasmic reticulum organization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!