LOC_Os08g02354.1


Description : no hits & (original description: none)


Gene families : OG0003198 (Archaeplastida) Phylogenetic Tree(s): OG0003198_tree ,
OG_05_0010661 (LandPlants) Phylogenetic Tree(s): OG_05_0010661_tree ,
OG_06_0012421 (SeedPlants) Phylogenetic Tree(s): OG_06_0012421_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g02354.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00036460 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AT5G24740 No alias Protein of unknown function (DUF1162) 0.1 Archaeplastida
Cpa|evm.model.tig00000042.92 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00000459.52 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00021440.8 No alias No description available 0.01 Archaeplastida
Cre17.g727600 No alias No description available 0.05 Archaeplastida
GSVIVT01019366001 No alias No description available 0.07 Archaeplastida
GSVIVT01019369001 No alias No description available 0.17 Archaeplastida
Gb_28330 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g02350.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10435329g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_12699g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_421560g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp7g13250.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c15_25690V3.1 No alias Protein of unknown function (DUF1162) 0.05 Archaeplastida
Smo439148 No alias No description available 0.05 Archaeplastida
Solyc11g045160.3.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e029198_P001 No alias no hits & (original description: none) 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR026854 VPS13_N 2 114
IPR031646 VPS13_N2 136 368
No external refs found!