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  5. LOC_Os08g02410.1

LOC_Os08g02410.1


Description : component RPS13 of SSU proteome


Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree ,
OG_06_0002387 (SeedPlants) Phylogenetic Tree(s): OG_06_0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g02410.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
AMTR_s00109p00088200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AT3G60770 No alias Ribosomal protein S13/S15 0.38 Archaeplastida
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.4 Archaeplastida
Cpa|evm.model.tig00000489.15 No alias 40S ribosomal protein S13 OS=Glycine max 0.09 Archaeplastida
Cre07.g331900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.44 Archaeplastida
GSVIVT01018537001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 Archaeplastida
GSVIVT01027637001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
Gb_18181 No alias component RPS13 of SSU proteome 0.19 Archaeplastida
Gb_34582 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
MA_141232g0010 No alias component RPS13 of SSU proteome 0.18 Archaeplastida
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.41 Archaeplastida
Pp3c11_1100V3.1 No alias ribosomal protein S13A 0.38 Archaeplastida
Pp3c16_15220V3.1 No alias ribosomal protein S13A 0.22 Archaeplastida
Pp3c7_26720V3.1 No alias ribosomal protein S13A 0.32 Archaeplastida
Smo440805 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
Solyc01g091220.3.1 No alias component RPS13 of SSU proteome 0.34 Archaeplastida
Solyc03g083530.3.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Solyc05g051000.3.1 No alias component RPS13 of SSU proteome 0.2 Archaeplastida
Solyc10g018250.2.1 No alias component RPS13 of SSU proteome 0.27 Archaeplastida
Solyc11g072260.2.1 No alias component RPS13 of SSU proteome 0.32 Archaeplastida
Zm00001e021837_P003 No alias component RPS13 of SSU proteome 0.41 Archaeplastida
Zm00001e021839_P001 No alias component RPS13 of SSU proteome 0.47 Archaeplastida
Zm00001e029210_P002 No alias component RPS13 of SSU proteome 0.44 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 74 146
No external refs found!