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  5. LOC_Os08g03676.1

LOC_Os08g03676.1


Description : Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana (sp|q9c8l6|ppr80_arath : 518.0)


Gene families : OG0012283 (Archaeplastida) Phylogenetic Tree(s): OG0012283_tree ,
OG_05_0011025 (LandPlants) Phylogenetic Tree(s): OG_05_0011025_tree ,
OG_06_0006275 (SeedPlants) Phylogenetic Tree(s): OG_06_0006275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g03676.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008664001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01037506001 No alias Pentatricopeptide repeat-containing protein At1g53600,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 301 327
IPR002885 Pentatricopeptide_repeat 359 385
IPR002885 Pentatricopeptide_repeat 328 356
IPR002885 Pentatricopeptide_repeat 168 193
IPR002885 Pentatricopeptide_repeat 102 129
IPR002885 Pentatricopeptide_repeat 563 590
IPR002885 Pentatricopeptide_repeat 132 157
IPR002885 Pentatricopeptide_repeat 462 483
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 42 68
IPR002885 Pentatricopeptide_repeat 387 435
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 488 537
IPR002885 Pentatricopeptide_repeat 194 221
No external refs found!