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  5. LOC_Os08g04190.1

LOC_Os08g04190.1


Description : transcription factor (HD-ZIP IV)


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001739 (SeedPlants) Phylogenetic Tree(s): OG_06_0001739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g04190.1
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AT1G05230 HDG2 homeodomain GLABROUS 2 0.04 Archaeplastida
AT1G34650 HDG10 homeodomain GLABROUS 10 0.03 Archaeplastida
AT2G32370 HDG3 homeodomain GLABROUS 3 0.03 Archaeplastida
AT4G04890 PDF2 protodermal factor 2 0.08 Archaeplastida
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.06 Archaeplastida
GSVIVT01012643001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01013073001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01027508001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
MA_10318273g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_10374232g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_103885g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_110607g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_122121g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_17048g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_305431g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_93471g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_9455995g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Mp7g09710.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Pp3c17_16910V3.1 No alias protodermal factor 2 0.03 Archaeplastida
Solyc02g080260.4.1 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
Solyc03g098200.4.1 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Solyc03g120620.3.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Solyc06g072310.3.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Solyc10g005330.3.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e002453_P001 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e006870_P004 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e015997_P002 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e017088_P001 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e021649_P002 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Zm00001e023786_P003 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e033353_P003 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e034755_P001 No alias transcription factor (HD-ZIP IV) 0.09 Archaeplastida
Zm00001e036212_P002 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e039947_P001 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Zm00001e040312_P001 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e041695_P001 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e042218_P002 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 89 144
IPR002913 START_lipid-bd_dom 266 491
No external refs found!