Description : DNA topoisomerase (TOP1)

Gene families : OG0003801 (Archaeplastida) Phylogenetic Tree(s): OG0003801_tree ,
OG_05_0003801 (LandPlants) Phylogenetic Tree(s): OG_05_0003801_tree ,
OG_06_0004899 (SeedPlants) Phylogenetic Tree(s): OG_06_0004899_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: LOC_Os08g05840.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT5G55300 MGO1, TOP1, TOP1ALPHA DNA topoisomerase I alpha 0.02 Archaeplastida
Mp6g05370.1 No alias DNA topoisomerase (TOP1) 0.02 Archaeplastida
Pp3c13_14620V3.1 No alias DNA topoisomerase 1 beta 0.02 Archaeplastida
Pp3c3_12300V3.1 No alias DNA topoisomerase 1 beta 0.04 Archaeplastida
Smo109207 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.03 Archaeplastida
Solyc07g049720.4.1 No alias DNA topoisomerase (TOP1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR025834 TopoI_C_dom 848 916
IPR008336 TopoI_DNA-bd_euk 373 584
IPR013500 TopoI_cat_euk 587 812
No external refs found!