LOC_Os08g05840.1

Description : DNA topoisomerase (TOP1)

Gene families : OG0003801 (Archaeplastida) Phylogenetic Tree(s): OG0003801_tree ,
OG_05_0003801 (LandPlants) Phylogenetic Tree(s): OG_05_0003801_tree ,
OG_06_0004899 (SeedPlants) Phylogenetic Tree(s): OG_06_0004899_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g05840.1
Cluster	HCCA: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
AT5G55300	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase I alpha	0.02	Archaeplastida
Mp6g05370.1	No alias	DNA topoisomerase (TOP1)	0.02	Archaeplastida
Pp3c13_14620V3.1	No alias	DNA topoisomerase 1 beta	0.02	Archaeplastida
Pp3c3_12300V3.1	No alias	DNA topoisomerase 1 beta	0.04	Archaeplastida
Smo109207	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.03	Archaeplastida
Solyc07g049720.4.1	No alias	DNA topoisomerase (TOP1)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025834	TopoI_C_dom	848	916
IPR008336	TopoI_DNA-bd_euk	373	584
IPR013500	TopoI_cat_euk	587	812

External Links

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LOC_Os08g05840.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation