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  5. LOC_Os08g06090.1

LOC_Os08g06090.1


Description : no hits & (original description: none)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000175 (LandPlants) Phylogenetic Tree(s): OG_05_0000175_tree ,
OG_06_0000116 (SeedPlants) Phylogenetic Tree(s): OG_06_0000116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06090.1
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G49220 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G74410 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G34000 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.05 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G30400 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.03 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01023776001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_00010 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_08038 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_20461 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g08200.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g15020.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os05g45060.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os10g39450.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os12g42540.1 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_1115518g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_3929631g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_393170g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_402876g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8338g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c21_17280V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo74486 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g081040.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g112340.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.06 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g007530.2.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g005020.2.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e019884_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e025397_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030102_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e034469_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e036085_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038107_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 106 150
No external refs found!